Chemistry and Life Sciences Resources Developed by Indiana University Personnel and Students
- PubChemSR (Search and Retrieve) Tool (Junguk Hur; download zip file from the Tools section, 452 KB)
- Beilstein Lawson Number Translator (Allison Tipton)
- Beilstein Organic Compound Classes (Gary Wiggins)
- CHEMINFO; Chemical Information Sources (Gary Wiggins)
- Chemical Information Sources Wiki (Gary Wiggins and Yan He)
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SIRCh: Selected Internet Resources for Chemistry Wiki (Gary Wiggins)
- Reciprocal Net; a distributed crystallography network for researchers, students, and the general public (John C. Huffman et al.)
- CATPA; Curation and Alignment Tool for Protein Analysis (Mehmet Dalkilic)
- PLATCOM; Platform for Computational Comparative Genomics (Sun Kim)
- euGenes (Don Gilbert)
- ComPath: Comparative Pathway Workbench built on KEGG and PLATCOM (Sun Kim)
- MutDB (Sean Mooney)
- Chimera Client for CICC Services (Randy Heiland)
- Cytochrome P450 Drug Interaction table (Indiana University - Purdue University - Indianapolis)
- Project ENABLE (Javed Mostafa, LAIR, IU School of Library and Information Science)
- Systems Biology Portal
(Peter Ortoleva, Center for Cell and Virus Theory)
- Cell Modeling - a suite of cell simulators:
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Karyote, a set of modules for building and simulating ordinary differential equation models of single and arrays of compartmented cells.
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CellX, a partial differential, 3-D simulator with bulk and surface processes.
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Roulette, a stochastic transcription, translation, post-translation simulator.
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Network Discovery
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TRND, an integrated workflow wherein user-supplied gene expression data generates transcriptional regulatory networks and derives their biological implications.
- Demo movie - a 15 minute
overview of how to use the site
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TRND Results, an interactive database of TRND-predicted networks.
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Virus/Nanoparticle Modeling
- SIBIOS, System for the Integration of BIOinformatics Services (Malika Mahoui)
- BioMAP, BioMedical Associations and Pathways (Mathew J. Palakal)
- BioFitWeb (Santiago Schnell) tools for estimation of parameters of enzyme catalytic properties from initial rate or time-course experimental data
- Drug Interations (David Flockhart)
- Zhou Lab Services (Yaoqi Zhou)
- SPEM (Prediction/analysis tools for sequences)
- TUPS (Prediction/analysis tools for secondary structures)
- SPINE (Structural properties of proteins by integrated neural networks)
- SPARKS, SCUD, DDOMAIN (Prediction/analysis tools for tertiary structures)
- DFIRE (Prediction analysis tools for interactions)
- DOGMA (Prediction/analysis tools for network graph)
- Prediction/analysis tools for folding kinetics
